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Now you can redirect cpanel.yourdomain.com, whm.yourdomain.com ,webmail.yourdomain.com and webdisk.yourdomain.com   without any issues in an nginx server.  You can add it to your current nginx configuration as follows,

# wget  http://download.sysvm.com/update/cpanelproxy.conf
# mv cpanelproxy.conf  /etc/cpnginx/

Now login to whm -> Plugins -> cPanel Nginx -> Advanced configuration editor  , and add the following line after the include line of

/usr/local/nginx/conf/vhost.conf

include “/etc/cpnginx/cpanelproxy.conf”;

Now restart nginx server  /etc/init.d/nginx restart

This fix will be available from the cpnginx version 2.1 .